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  "Title": "Computation of Ancestry Scores with Mixed Families and Unrelated\nIndividuals",
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  "Author": "Yi-Hui Zhou",
  "Maintainer": "Yi-Hui Zhou <yihui_zhou@ncsu.edu>",
  "Description": "We provide several algorithms to compute the genotype\nancestry scores (such as eigenvector projections) in the case\nwhere highly correlated individuals are involved.",
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        "PCFAM"
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